Get to know it. The GAT team maintains some infrastructure to handle the bootstrapping in the GAT repository. However, this distinction of regions is not necessary. Each of these commands run a couple checks on their local machine. ), (Generates if needed) and copies an SSH key to all of the machines to make login easier (this is stored in, This key is set as the ubuntu users key, and added to their authorized_keys, to permit them to run ansible easily on that machine (if they dont configure the local connection correctly. 06-03-2020 13:30 Galaxy Admin Training week will be offered 2-6 March 2020 at the Barcelona Supercomputing Center (BSC) in Barcelona, Spain. A Very Short Introduction to Galaxy Lecture & Demo Video usegalaxy.org is supported by NIH and NSF Grants HG006620, 1661497, and 1929694. usegalaxy.eu is supported by the German Federal Ministry of Education and Research grant 031L0101C and de.NBI-epi. Place this in the GAT Machines spreadsheet in the correct tab. Well be using Ubuntu based images during the workshop, which means well be using apt to do package management. Questions? Friday Galaxy Admin Training November 7-11, 2016 University of Utah Salt Lake City, Utah United States Register by October 16 Lodging released October 6 Basics Session Advanced Session| Registration Logistics Publicity November 8-11, University of Utah Campus The three day advanced session will build on topics covered in the basics section. Topic order and specific start and end times are likely to change. Advanced Session| Please review the prerequisites carefully before registering. Galaxy Architecture Session, Tuesday evening, November 7. Admin UI, Log files, Direct database queries, Command line & scripts, What to backup and how, Advanced tool definition: visualizations, data managers, Questions? These Ansible roles and training materials were last tested on Centos 7 and Ubuntu 18.04, but will probably work on other RHEL and Debian variants. If you are new to Galaxy and want to administer your own service read the Ten Simple Rules for Setting up a Galaxy Instance as a Service. Linux has several text editors available in it. To give a Galaxy user admin privileges you have to add their Galaxy login ( email ) to the Galaxy configuration file config/galaxy.yml. Read the full report for all the numbers, details, conclusions and feedback. Heres a sampling of commands and concepts that you should be comfortable with: Note: This is not an exhaustive list (or even a proper subset) of the commands that will be used in the workshop. Basics Session Did you use this material as an instructor? You'll also learn and how to extend your Galaxy with your own tools and tools from the community, and how to define reference data in your server as well. In the hosts file, edit the [workshop_eu] section to list all of your IPs or DNS entries. Defining and importing genomes, cont. Learn how to run a Galaxy server. 1. Topics covered include. This is seen in the workshop_eu and workshop_oz groups, and the corresponding commands in the Makefile. ns2.gname.net @ represents the DNS zone origin galaxytraining.net as often found in BIND zone files. Lodging, the airport, and all training events are on the University of Utah campus or in downtown Salt Lake City, and all are easily accessible using TRAX, Salt Lake's light rail network. 5 days, 106 registrations, 29 countries, 12.5 hours of video and 100% awesomeness. IEVISION is one of the first Salesforce ADM 201 training provider in Berlin city in GERMANY. This two day workshop will cover the big picture, and installation, configuration, and customization basics. ns1.gname.net. Get a basic Galaxy server up and running. The first ever Galaxy Project Admin Training workshop will be held November 7-11 in Salt Lake City, Utah. Learn how to run a Galaxy server. See the Registration page for dates, rates, and other details. Comment: Galaxy Step 1 ansible-galaxy Step 2 tus Step 3 cvmfs Step 4 singularity Step 5 tool-management Step 6 data-library Step 7 connect-to-compute-cluster Step 8 job-destinations Step 9 pulsar Step 10 gxadmin Step 11 monitoring Step 12 tiaas reports ftp Installing Singularity First, we will install Singularity using Ansible. Now youll need to bootstrap the instances and prepare them for student use. Contact [Galaxy Outreach](mailto:outreach@galaxyproject.org), Comfortable with the Unix/Linux command line, Some experience with Linux Package Management. Welcome & Setup (Start Here!) There you can learn to integrate webhooks . Topic order and specific start and end times are likely to change. They are included here to give you an idea of the depth of knowledge that is required. Everything you were taught in the past few days can be found in the Galaxy Admin Training repository, which mostly points to the admin section of the Galaxy Training Materials.. For those of you who also need to do some Galaxy development, there is a dev section of training materials for those topics as well. This two day introductory session will cover how to: See the Basics Session page for details and prerequisites. Database choices and configuration (SQLite & PostgreSQL), Web server choices and configuration (NGINX & Apache), Identifying and installing well-defined tools from the Galaxy Tool Shed. This is an asynchronous event. The three day advanced session will build on topics covered in the basics section. You need to have a solid grasp of the, Linux command line, a text editor, and Linux package management. admin.gname.net. Basic and Advanced Topics sessions will be offered and participants can register for one or both. If you are running Windows than youll need to get something like putty installed before the workshop. This is a hub page on topics related to deployment and administration of your own instance of Galaxy. Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface. The last command runs the playbook.yml, which in turn does a large number of things: Once your VMs are ready, you should test ALL of the lessons you intend to teach. Additionally you know precisely which students you should reach out to check in with, if they arent progressing. Publicity. Basics Session: November 7-8. Whatever is your background, there is probably a way to do it: via the GitHub website, via command-line. The -eu again refers to the specific pool of machines, and if youre using a different hosts file, with different group names, you may need to edit the Makefile accordingly. usegalaxy.org.au is supported by Bioplatforms Australia and the Australian Research Data Commons. The three day advanced session will build on topics covered in the basics section. Galaxy Admin Training 2016 is a weeklong event offering basic and advanced sessions. (others coming soon.) 140 pengikut 140 kenalan. * Could include. Remove the workshop_oz from the top of the file under [workshop_instances:children]. The first ever Galaxy Project Admin Training workshop will be held November 7-11 in Salt Lake City, Utah. The most simple hosts file looks like: git clone https://github.com/galaxyproject/admin-training/ and change into that repo. These videos will introduce you to the Galaxy platform, and walk you through your first analyses. Please review the prerequisites carefully before registering. I have completed the cloud computing certification alongwith salesforce admin adm201 training.. Trainer was my mentor and had guided with his best teaching experience..He . Supporting Materials: Topic Overview slides . admin-training is a Shell library typically used in Devops, Continuous Deployment, Ansible, Nginx, Docker applications. Place the list of usernames and IPs and passwords in the GAT Machines spreadsheet in the correct tab. When an admin user logs into Galaxy, they will see an "Admin" menu item in the top Galaxy menu bar which will take them to the Galaxy Admin page with an administration panel. Galaxy versions or the availability of newer versions of some ansible modules will indicate you should test the training as you plan to teach it, and update the training materials where relevant. Topics include tool configuration, authentication and user management, using heterogeneous storage and compute services, and many other topics that will enable you to get your own Galaxy server up and running, performing well, and used by your community. During the course, your System Admin will: Learn best practices for base configuration in the core modules and the eGalaxy Web Store. with at minimum the following links: During planning for BCC2020 we found that monitoring student progress would be extremely difficult, it was not a situation we had encountered before as this was the first remote GAT during the pandemic. This is a draft schedule and is a work in progress. Logistics ; Data Managers, Extending your installation: Enabling FTP & SMTP. Course Duration: 5 Days Daily Schedule: 11 AM - 6 PM EST / 8 AM - 3 PM PST / 10 AM - 6 PM CET Where: Dalet iLearn - Interactive Online Learning Environment Fees: 1,800 / $1,800 Seats: Limited to 10 . Full Story Galaxy Server administration language . Ansible Essential Training Administrative Human Resources Lihat semua kursus Lencana profil awam Haifa Nadia Sertakan profil LinkedIn ini di laman web lain . Can't make it to Salt Lake or on another continent? Basics Session Once deployed, clone/pull the repository locally and run ./bin/process-training-output.sh. usegalaxy.org is supported by NIH and NSF Grants HG006620, 1661497, and 1929694. usegalaxy.eu is supported by the German Federal Ministry of Education and Research grant 031L0101C and de.NBI-epi. This repo includes an admin-corner for training material about administering Galaxy. If you are a Galaxy user or admin, you can create, or tag existing GitHub issues for any irritating, but likely easily fixed bugs (make a guess). Setting up and running a Galaxy Admin Training is not a very complicated process thanks to a significant amount of work that has been put into making it easy and quick. First consider the requirements for your training: We recommend checking out an example schedule from the GAT repository and modifying it based on your needs. We will use compute resources from the University of Utah Center for High Performance Computing (CHPC) for cluster access during the advanced session. Registration We developed our structured 10-week Galaxy Certification Course to address both of your challenges. Receive guidance from an expert Galaxy certified instructor, as well as independently complete self-paced courses. To control Galaxy through the UI (installing tools, managing users, creating groups, etc. admin-training has no bugs, it has no vulnerabilities and it has low support. So we developed a small utility, the gat-cli, which assists in monitoring students progress. Skip to the section on setting up below that is appropriate for you. How comfortable do you need to be? Related Keywords. We'll present these topics by exploring several specific examples in detail. 1616133237 7200 3600 1209600 1800: @ A: 154.204.248.3 @ NS: . They are: We would like to thank the University of Utah Center for High Performance Computing (CHPC) for compute infrastructure support, and the USTAR Center for Genetic Discovery (UCGD), Department of Biomedical Informatics and the Clinical & Translational Science Biomedical Informatics Core (CCTS BMIC) at the University of Utah for hosting this event. University of Utah Center for High Performance Computing (CHPC), USTAR Center for Genetic Discovery (UCGD), Clinical & Translational Science Biomedical Informatics Core (CCTS BMIC), Database choices and configuration (SQLite & PostgreSQL), Web server choices and configuration (NGINX & Apache), Identifying and installing well-defined tools from the Galaxy Tool Shed, Interactive environments: development and deployment, Using and configuring external authentication services, Using public and private cloud compute resources, Storage management and using heterogeneous storage services, Customizing and extending your Galaxy code. If you arrive without meeting the prerequisites then the workshop will be a frustrating experience. Also make sure you don't specify it twice - the line with admin_users is already present in every sample config and should be there only once. Sertai untuk berhubung . Registration Only registered users can become admins. Questions? EU provides appropriate DNS entries so you can run trainings with ITs. This session both extends those topics, such as tool definition, and adds new ones, such as working with compute clusters and heterogeneous resources. The slides and tutorials for your training. Tell us the number of students and dates of the event. Infrastructure is available for running GATs for free from UseGalaxy.eu, This can be very convenient and easy to use. Galaxy Installation with Ansible: slides slides - tutorial hands-on; Time estimation: 30 minutes. Introduction to Galaxy . We encourage everyone involved in hosting a GAT event to read this, so you are aware of all of the moving parts which are required for such an event. Does http://localhost:8080/api/version respond with, Does https://localhost:443/api/version respond with. Start here if you are new to Galaxy. Organizers will make sure that these editors are available on the Linux images we use in the workshop: You dont need to be an expert at Linux package management, but you do need to have some experience at installing and upgrading packages on a Linux system. If you arent comfortable with this before you arrive, then you will be lost the entire time. The 2019 Galaxy Admin Training will be offered January 28 through February 1 at Penn State University (where the Galaxy Project got started over ten years ago). We recommend providing a website similar to our GitHub repository (or using our repository! We would like to thank the USTAR Center for Genetic Discovery (UCGD) for a grant to book this great venue for the advanced workshop. Once your training is concluded, go through the questions students have asked in the Google Doc, and consider contributing them back to the training materials with Tips and Question boxes covering these student questions. The domain has been registered . usegalaxy.org is supported by NIH and NSF Grants HG006620, 1661497, and 1929694. usegalaxy.eu is supported by the German Federal Ministry of Education and Research grant 031L0101C and de.NBI-epi. The workshop offers a 2 day introductory session followed by a 3 day advanced topics session.Participants can register for one or both sessions. Ten Simple Rules for Setting up a Galaxy Instance as a Service. When an admin user logs into Galaxy, they will see an "Admin" menu item in the top Galaxy menu bar which will take them to the Galaxy Admin page with an administration panel. Having actual experience with setting up and running your own Galaxy server. This tutorial has multiple audiences who are all adressed within this one tutorial. This is one of three comprehensive Galaxy admin and developer training events between November and February. ), user must become an administrator. Instructors are from the Galaxy Project Team and the Galaxy Community: Participants can register for one or both workshops. All prerequisites from the Basic Topics workshop. If you have your own cloud, setup VMs per student. Training will take place the week before Supercomputing'16 (SC16) meets in Salt Lake. Understanding of material covered in the Basic Topics workshop. Step 1ansible-galaxy Step 2tus Step 3cvmfs Step 4singularity Step 5tool-management Step 6data-library Step 7connect-to-compute-cluster Step 8job-destinations Step 9pulsar You can specify ansible_user=something if it uses a different username, and ansible_password=password for each machine. This tutorial has multiple audiences who are all adressed within this one tutorial. Participants will learn how to . The yearly Galaxy Admin Training follows a specific ordering of tutorials. E.g. Rates depend on your organization's non-profit status and when you register. To get you started, check our dedicated tutorials or our Frequently Asked Questions There are other make check- commands for each of the gat status commands. Data Driven Research for Everyone Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research. The advanced session will be held at the Commanders House on the University of Utah campus. Open a PR editing the count variable and increasing it to the desired number of VMs. Deploying Install own Galaxy Run on the Cloud Infrastructure Maintaining an Instance Configuration Authentication and Authorization Production Configuration Installing Tools In our experience this is an excellent format for discussion: it allows students to ask as many questions as they have, and responses can be given in real-time right below each question. Participants will learn how to install, configure, customize, and extend their own Galaxy servers. 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